General Information
DRAVP ID DRAVPe00001
Peptide Name NL1
Sequence EEHEKYHSNW
Sequence Length 10
UniProt ID No entry found
Taxon ID None
Source Synthetic construct(derived from HIV-1 integrase)
Validation Experimentally Validated
Origin Information
Gene Name/ID Not Available
GenBank Not Available
Amino Acid position Not Available
Domain Accession ID Not Available
Nucleotide sequence ID Not Available
Molecular Type Not Available
Chromosomal Position Not Available
Activity Information
Target Organism HIV
Assay Integrase Assay
Activity
Hemolytic Activity No hemolysis information or data found in the reference(s) presented in this entry
Cytotoxicity
Binding Target Integrase
Mechanism HIV-1 integrase (IN) is essential for viral replication. Following reverse transcription of the RNA into DNA by HIV-1 reverse transcriptase, IN integrates the viral DNA into the host genome.The peptide could inbibit integrase(By inhibiting the two steps of IN catalysis: 3′-processing and strand transfer).
Structure Information
PDB ID None
Predicted Structure Download DRAVPe00001
Linear/Cyclic Linear
N-terminal Modification Free
C-terminal Modification Amidation
Other Modification None
Stereochemistry L
Physicochemical Information
Formula C60H79N17O20
Absent amino acids ACDFGILMPQRTV
Common amino acids E
Mass 1358.39
Pl 5.33
Basic residues 3
Acidic residues 3
Hydrophobic residues 1
Net charge 0
Boman Index -4315
Hydrophobicity -273
Aliphatic Index 0
Half Life
Extinction Coefficient cystines 6990
Absorbance 280nm 776.67
Polar residues 3
Literature Information
Literature 1
Title Sequence-based design and discovery of peptide inhibitors of HIV-1 integrase: insight into the binding mode of the enzyme.
Pubmed ID 16854053
Reference J Med Chem. 2006 Jul 27;49(15):4477-86.
Author Li HY, Zawahir Z, Song LD, Long YQ, Neamati N.