General Information


DRAVP ID  DRAVPe01558

Peptide Name   RTD-3 (rhesus theta defensin 3)

Sequence  GFCRCICTRGFCRCICTR

Sequence Length  18

UniProt ID  P82270,Q9TU01 

Source  Macaca mulatta (Rhesus macaque)



Activity Information


Target Organism  HIV

Assay 

Activity 

  • [Ref.15210812]HIV-1 A:inhibition of infection in JC53-BL cells(IC50=3.26 ± 0.58 µg/ml);
  • HIV-1 B:inhibition of infection in JC53-BL cells(IC50=1.74± 0.40 µg/ml);
  • HIV-1 C:inhibition of infection in JC53-BL cells(IC50=4.31 ± 0.90 µg/ml);
  • HIV-1 CRF01_AE:inhibition of infection in JC53-BL cells(IC50=2.09 ± 0.60 µg/ml);
  • HIV-1 D:inhibition of infection in JC53-BL cells(IC50=2.31 ± 0.21 µg/ml);
  • HIV-1 G:inhibition of infection in JC53-BL cells(IC50=3.04 ± 0.64 µg/ml);
  • HIV-1 BF:inhibition of infection in JC53-BL cells(IC50=0.89 µg/ml).

Hemolytic Activity  No hemolysis information or data found in the reference(s) presented in this entry

Cytotoxicity  No cytotoxicity information found in the reference(s) presented

Binding Target  gp120,CD4

Mechanism  The peptide binds to gp120 and CD4, thereby inhibiting HIV entry.



Structure Information


PDB ID  None

Predicted Structure Download  DRAVPe01558

Linear/Cyclic  Cyclic

N-terminal Modification  Cyclization (N termini to C termini)

C-terminal Modification  Cyclization (N termini to C termini)

Other Modification  Disulfide bonds between Cys3 and Cys16,Cys5 and Cys14,Cys7 and Cys12.

Stereochemistry  L



Physicochemical Information


Formula  C84H140N30O21S6

Absent amino acids  ADEHKLMNPQSVWY

Common amino acids  C

Mass  2098.58

Pl  9.01

Basic residues  4

Acidic residues  0

Hydrophobic residues  4

Net charge  4

Boman Index  -3946

Hydrophobicity  52.22

Aliphatic Index  43.33

Half Life 

  •     Mammalian:30 hour
  •     Yeast:>20 hour
  •     E.coli:>10 hour

Extinction Coefficient cystines  375

Absorbance 280nm  22.06

Polar residues  10



Literature Information


Literature 1

Title   Activity of alpha- and theta-defensins against primary isolates of HIV-1. 

Pubmed ID   15210812

Reference   J Immunol. 2004 Jul 1;173(1):515-20.

Author   Wang W, Owen SM, Rudolph DL, Cole AM, Hong T, Waring AJ, Lal RB, Lehrer RI.

DOI   10.4049/jimmunol.173.1.515