General Information
DRAVP ID DRAVPe00075
Peptide Name 5628(derived from RNase H domain of HIV-1 RT (15-mers))
Sequence ESELVSQIIEQLIKK
Sequence Length 15
UniProt ID No entry found
Source Synthetic construct(derived from HIV-1 Reverse Transcriptase)
Activity Information
Target Organism HIV
Assay Dot-blot assay
Activity
Hemolytic Activity No hemolysis information or data found in the reference(s) presented in this entry
Cytotoxicity
Binding Target Integrase
Mechanism Two viral encoded enzymes(reverse transcriptase and integrase) play central roles in the early stages of the replication of retroviruses and retrotransposons.The peptide derived from the RNase H domain of HIV-1 RT inhibits integrase-associated activities (3′-end processing and strand transfer) and inhibit virus replication.
Structure Information
PDB ID None
Predicted Structure Download DRAVPe00075
Linear/Cyclic Linear
N-terminal Modification Free
C-terminal Modification Free
Other Modification None
Stereochemistry L
Physicochemical Information
Formula C78H137N19O26
Absent amino acids ACDFGHMNPRTWY
Common amino acids EI
Mass 1757.06
Pl 4.79
Basic residues 2
Acidic residues 3
Hydrophobic residues 6
Net charge -1
Boman Index -2077
Hydrophobicity -10.67
Aliphatic Index 149.33
Half Life
Extinction Coefficient cystines 0
Absorbance 280nm 0
Polar residues 2
Literature Information
Literature 1
Title Peptides derived from the reverse transcriptase of human immunodeficiency virus type 1 as novel inhibitors of the viral integrase.
Pubmed ID 15790559
Reference J Biol Chem. 2005 Jun 10;280(23):21987-96.
Author Oz Gleenberg I, Avidan O, Goldgur Y, Herschhorn A, Hizi A.